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 <channel rdf:about="http://ebiquity.umbc.edu//tags/html/?t=bioinformatics">
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  <title><![CDATA[UMBC ebiquity RSS Tag Search]]></title>
  <link><![CDATA[http://ebiquity.umbc.edu//tags/html/?t=bioinformatics]]></link>
  <description><![CDATA[UMBC ebiquity RSS Tag Search for bioinformatics]]></description>
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    <rdf:Seq>
      <rdf:li resource="http://ebiquity.umbc.edu/conference/html/id/18/ontology-for-the-intelligence-community"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/255/Domain-based-computational-approaches-to-understand-the-molecular-basis-of-diseases"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/253/Frontiers-of-Multicore-Computing"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/224/FALCON-Zero-in-on-the-Native-Protein-Structure"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/189/Reconfigurable-Supercomputing-the-Progress-the-Challenges-and-the-Potential"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/185/The-Science-of-Interaction-A-New-NSF-Initiative"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/81/Semantic-Web-Technology-Recent-Successes-and-Research-Challenges"/>
      <rdf:li resource="http://ebiquity.umbc.edu/event/html/id/73/MS-defense-Building-a-Database-semanticizer-for-Task-Computing"/>
      <rdf:li resource="http://ebiquity.umbc.edu/getnews/html/id/23/UMBC-and-IBM-collaborate-on-autonomic-computing"/>
      <rdf:li resource="http://ebiquity.umbc.edu/project/html/id/66/Database-Semanticizer"/>
      <rdf:li resource="http://ebiquity.umbc.edu/project/html/id/82/RDF123"/>
      <rdf:li resource="http://ebiquity.umbc.edu/project/html/id/9/Spire"/>
      <rdf:li resource="http://ebiquity.umbc.edu/paper/html/id/796/A-more-appropriate-Protein-Classification-using-Data-Mining"/>
      <rdf:li resource="http://ebiquity.umbc.edu/resource/html/id/74/Database-Semanticizer-Presentation"/>
      <rdf:li resource="http://ebiquity.umbc.edu/resource/html/id/252/Domain-based-computational-approaches-to-understand-the-molecular-basis-of-diseases"/>
      <rdf:li resource="http://ebiquity.umbc.edu/resource/html/id/238/RDF-Web-service-v1-0-java-servlet-"/>
      <rdf:li resource="http://ebiquity.umbc.edu/resource/html/id/237/RDF123-java-application-v1-0"/>
      <rdf:li resource="http://ebiquity.umbc.edu/resource/html/id/236/RDF123-linux-application-v1-0-With-Java-VM-self-contained-"/>
      <rdf:li resource="http://ebiquity.umbc.edu/resource/html/id/228/RDF123-windows-application-v1-0-With-Java-VM-self-contained-"/>
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 </channel>
 <item rdf:about="http://ebiquity.umbc.edu/conference/html/id/18/ontology-for-the-intelligence-community">
  <title><![CDATA[ontology for the intelligence community]]></title>
  <link>http://ebiquity.umbc.edu/conference/html/id/18/ontology-for-the-intelligence-community</link>
  <description><![CDATA[The increasing volume, variety and velocity of intelligence analysis in the post 9/11 era requires new approaches to information system design that enable greater flexibility, precision, timeliness and automation of analysis to maximize valuable human resources in responding to fast-evolving threats. Ontology-based technology as applied in areas such as bioinformatics has demonstrated the possibility of gains along all these dimensions. The time is right to take ontology seriously also in oth...]]></description>
  <dc:date>2006-11-30</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/255/Domain-based-computational-approaches-to-understand-the-molecular-basis-of-diseases">
  <title><![CDATA[Domain-based computational approaches to understand the molecular basis of diseases]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/255/Domain-based-computational-approaches-to-understand-the-molecular-basis-of-diseases</link>
  <description><![CDATA[Protein domains, or domains, are the evolutionary, structural and
functional units of the proteins. Despite the obvious relevance of
domains to understanding biological process at the molecular level,
most high-throughput experimental data relating molecular information
to biological process, including diseases, is only analyzed at the
gene or protein level. I will introduce a new approach, the protein
domain profiling, to analyze clinical data derived from microarray and
other experim...]]></description>
  <dc:date>2008-09-05</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/253/Frontiers-of-Multicore-Computing">
  <title><![CDATA[Frontiers of Multicore Computing]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/253/Frontiers-of-Multicore-Computing</link>
  <description><![CDATA[The UMBC Multicore Computation Center is hosting a free workshop on Frontiers of Multicore Computing 26-28 August 2008 at UMBC. The workshop will feature leading computational researchers who will share their current experiences with multicore applications. A number of computer architects and major vendors have also been invited to describe their road maps to near and long-term future system developments.  The FMC workshop will focus on applications in the fields of geosciences, aerospace, de...]]></description>
  <dc:date>2008-08-26</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/224/FALCON-Zero-in-on-the-Native-Protein-Structure">
  <title><![CDATA[FALCON: Zero in on the Native Protein Structure]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/224/FALCON-Zero-in-on-the-Native-Protein-Structure</link>
  <description><![CDATA[Protein structure prediction has been a heuristic science.  From homology modeling, threading, to Monte Carlo fragment assembly, decoy clustering, selection, refinement, and consensus, there is no unified model or theory governing the complete process.

We believe the protein structure prediction problem will only be solved by a simple computational model.  We wish to find a single and simple mathematical model that encompasses all of above paradigms and that takes a sequence and converges ...]]></description>
  <dc:date>2008-02-01</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/189/Reconfigurable-Supercomputing-the-Progress-the-Challenges-and-the-Potential">
  <title><![CDATA[Reconfigurable Supercomputing: the Progress, the Challenges and the Potential]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/189/Reconfigurable-Supercomputing-the-Progress-the-Challenges-and-the-Potential</link>
  <description><![CDATA[The synergy between high-performance computing and reconfigurable computing, based on field programmable gate arrays (FPGAs), has resulted in a new class of computer architectures, namely reconfigurable high-peformance computer systems (also known as Reconfigurable Supercomputers). Such systems inherently support both fine-grain and coarse-grain parallelism, and can potentially tune their architecture dynamically to fit applications. In addition to the very rich body of research work, this di...]]></description>
  <dc:date>2007-02-09</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/185/The-Science-of-Interaction-A-New-NSF-Initiative">
  <title><![CDATA[The Science of Interaction: A New NSF Initiative]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/185/The-Science-of-Interaction-A-New-NSF-Initiative</link>
  <description><![CDATA[The Science of Interaction initiative aims to establish, explore and
exploit the role of communications and computing in all other sciences
and engineering.  It is envisioned as a basic, trans-disciplinary
field, comprised of elements of mathematical, physical, social,
biological, earth and computing sciences, with applications in every
engineering discipline. As we continue to populate the Earth and space
with complex, heterogeneous, interconnected, interdependent manmade
systems, suc...]]></description>
  <dc:date>2006-11-07</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/81/Semantic-Web-Technology-Recent-Successes-and-Research-Challenges">
  <title><![CDATA[Semantic Web Technology: Recent Successes and Research Challenges]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/81/Semantic-Web-Technology-Recent-Successes-and-Research-Challenges</link>
  <description><![CDATA[Semantics is seen as the key ingredient in the next phase of the Web
infrastructure as well as the next generation of information systems
applications.

Ontology-driven techniques and systems have already enabled new
generation of Semantic Applications in such markets as bioinformatics,
financial services, business intelligence, and national security.  We
begin the talk with a sampling of semantic applications already
developed for Enterprises.  We review the capabilitiies for creatin...]]></description>
  <dc:date>2005-03-01</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/event/html/id/73/MS-defense-Building-a-Database-semanticizer-for-Task-Computing">
  <title><![CDATA[MS defense: Building a Database semanticizer for Task Computing]]></title>
  <link>http://ebiquity.umbc.edu/event/html/id/73/MS-defense-Building-a-Database-semanticizer-for-Task-Computing</link>
  <description><![CDATA[The vision of the Semantic web is to give the web a well defined meaning
by representing the same in OWL and linking it to ontologies accepted
commonly by standardization efforts. Most of the formatted data is today
stored in the form of relational databases. We need to RDFize it in order
to use this data on the Semantic Web. The data model behind RDF is a
directed labeled graph, which consists of nodes and labeled directed arcs
linking pairs of nodes. To export data from an RDBMS into ...]]></description>
  <dc:date>2004-12-06</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/getnews/html/id/23/UMBC-and-IBM-collaborate-on-autonomic-computing">
  <title><![CDATA[UMBC and IBM collaborate on autonomic computing]]></title>
  <link>http://ebiquity.umbc.edu/getnews/html/id/23/UMBC-and-IBM-collaborate-on-autonomic-computing</link>
  <description><![CDATA[University of Maryland, Baltimore County and IBM Collaborate on 
Autonomic Computing Research

BALTIMORE, February 24, 2005 - IBM today announced a new Shared University Research (SUR) grant awarded a group of faculty researchers of the eBiquity research group at the University of Maryland, Baltimore County to help build a major new center for high performance computational research. 

This SUR grant is part of the latest series of Shared University Research (SUR) awards, bringing IBM's ...]]></description>
  <dc:date>2005-02-24</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/project/html/id/66/Database-Semanticizer">
  <title><![CDATA[Database Semanticizer]]></title>
  <link>http://ebiquity.umbc.edu/project/html/id/66/Database-Semanticizer</link>
  <description><![CDATA[The vision of the Semantic web is to give the web a well defined meaning by representing the same in OWL and linking it to ontologies accepted commonly by standardization efforts. Most of the formatted data is today stored in the form of relational databases. We need to RDFize it in order to use this data on the Semantic Web. The data model behind RDF is a directed labeled graph, which consists of nodes and labeled directed arcs linking pairs of nodes. To export data from an RDBMS into R...]]></description>
  <dc:date>2004-05-01</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/project/html/id/82/RDF123">
  <title><![CDATA[RDF123]]></title>
  <link>http://ebiquity.umbc.edu/project/html/id/82/RDF123</link>
  <description><![CDATA[RDF123 is an application and web service for converting data in simple spreadsheets to an RDF graph.  Users control how the spreadsheet's data is converted to RDF by constructing a graphical RDF123 template that specifies how each row in the spreadsheet is converted as well as metadata for the spreadsheet and its RDF translation.  The template can map spreadsheet cells to a new RDF node or to a literal value. Labels on the nodes in the map can be used to create blank nodes or labeled nodes, a...]]></description>
  <dc:date>2007-04-01</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/project/html/id/9/Spire">
  <title><![CDATA[Spire]]></title>
  <link>http://ebiquity.umbc.edu/project/html/id/9/Spire</link>
  <description><![CDATA[Spire is a distributed, interdisciplinary research project exploring the use of semantic web technologies in support science in general and the field of ecoinformatics in particular. Spire has received funding from the National Science Foundation ITR program and additional funding is expected from several other government agencies.]]></description>
  <dc:date>2003-09-01</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/paper/html/id/796/A-more-appropriate-Protein-Classification-using-Data-Mining">
  <title><![CDATA[A more appropriate Protein Classification using Data Mining]]></title>
  <link>http://ebiquity.umbc.edu/paper/html/id/796/A-more-appropriate-Protein-Classification-using-Data-Mining</link>
  <description><![CDATA[Research in bioinformatics is a complex phenomenon as it overlaps two knowledge domains, namely, biological and computer sciences. This paper has tried to introduce an efficient data mining approach for classifying proteins into some useful groups by representing them in hierarchy tree structure. There are several techniques used to classify proteins but most of them had few drawbacks on their grouping. Among them the most efficient grouping technique is used by PSIMAP. Even though PSIMAP (Pr...]]></description>
  <dc:date>2010-11-30</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/resource/html/id/74/Database-Semanticizer-Presentation">
  <title><![CDATA[Database Semanticizer Presentation]]></title>
  <link>http://ebiquity.umbc.edu/resource/html/id/74/Database-Semanticizer-Presentation</link>
  <description><![CDATA[The vision of the Semantic web is to give the web a well defined meaning
by representing the same in OWL and linking it to ontologies accepted
commonly by standardization efforts. Most of the formatted data is today
stored in the form of relational databases. We need to RDFize it in order
to use this data on the Semantic Web. The data model behind RDF is a
directed labeled graph, which consists of nodes and labeled directed arcs
linking pairs of nodes. To export data from an RDBMS into ...]]></description>
  <dc:date>2004-12-06</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/resource/html/id/252/Domain-based-computational-approaches-to-understand-the-molecular-basis-of-diseases">
  <title><![CDATA[Domain-based computational approaches to understand the molecular basis of diseases]]></title>
  <link>http://ebiquity.umbc.edu/resource/html/id/252/Domain-based-computational-approaches-to-understand-the-molecular-basis-of-diseases</link>
  <description><![CDATA[Protein domains, or domains, are the evolutionary, structural and functional units of the proteins. Despite the obvious relevance of domains to understanding biological process at the molecular level, most high-throughput experimental data relating molecular information to biological process, including diseases, is only analyzed at the gene or protein level. I will introduce a new approach, the protein domain profiling, to analyze clinical data derived from microarray and other experimental h...]]></description>
  <dc:date>2008-09-05</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/resource/html/id/238/RDF-Web-service-v1-0-java-servlet-">
  <title><![CDATA[RDF Web service v1.0 (java servlet)]]></title>
  <link>http://ebiquity.umbc.edu/resource/html/id/238/RDF-Web-service-v1-0-java-servlet-</link>
  <description><![CDATA[RDF123 is an application and web service for converting data in simple spreadsheets to an RDF graph.  The spreadsheets must consist of a single table with or without header rows.  Users control how the spreadsheet's data is converted to RDF by constructing a graphical RDF123 template that specifies how each row in the spreadsheet is converted as well as metadata for the spreadsheet and its RDF translation.  The template can map a spreadsheet cell to a new RDF node or to a literal value. Label...]]></description>
  <dc:date>2007-08-07</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/resource/html/id/237/RDF123-java-application-v1-0">
  <title><![CDATA[RDF123 java application v1.0]]></title>
  <link>http://ebiquity.umbc.edu/resource/html/id/237/RDF123-java-application-v1-0</link>
  <description><![CDATA[RDF123 is an application and web service for converting data in simple spreadsheets to an RDF graph.  The spreadsheets must consist of a single table with or without header rows.  Users control how the spreadsheet's data is converted to RDF by constructing a graphical RDF123 template that specifies how each row in the spreadsheet is converted as well as metadata for the spreadsheet and its RDF translation.  The template can map a spreadsheet cell to a new RDF node or to a literal value. Label...]]></description>
  <dc:date>2007-08-07</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/resource/html/id/236/RDF123-linux-application-v1-0-With-Java-VM-self-contained-">
  <title><![CDATA[RDF123 linux application v1.0 (With Java VM self-contained)]]></title>
  <link>http://ebiquity.umbc.edu/resource/html/id/236/RDF123-linux-application-v1-0-With-Java-VM-self-contained-</link>
  <description><![CDATA[RDF123 is an application and web service for converting data in simple spreadsheets to an RDF graph.  The spreadsheets must consist of a single table with or without header rows.  Users control how the spreadsheet's data is converted to RDF by constructing a graphical RDF123 template that specifies how each row in the spreadsheet is converted as well as metadata for the spreadsheet and its RDF translation.  The template can map a spreadsheet cell to a new RDF node or to a literal value. Label...]]></description>
  <dc:date>2007-08-07</dc:date>
 </item>
 <item rdf:about="http://ebiquity.umbc.edu/resource/html/id/228/RDF123-windows-application-v1-0-With-Java-VM-self-contained-">
  <title><![CDATA[RDF123 windows application v1.0 (With Java VM self-contained)]]></title>
  <link>http://ebiquity.umbc.edu/resource/html/id/228/RDF123-windows-application-v1-0-With-Java-VM-self-contained-</link>
  <description><![CDATA[RDF123 is an application and web service for converting data in simple spreadsheets to an RDF graph.  The spreadsheets must consist of a single table with or without header rows.  Users control how the spreadsheet's data is converted to RDF by constructing a graphical RDF123 template that specifies how each row in the spreadsheet is converted as well as metadata for the spreadsheet and its RDF translation.  The template can map a spreadsheet cell to a new RDF node or to a literal value. Label...]]></description>
  <dc:date>2007-08-08</dc:date>
 </item>
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